For new people, it's best to stick to equo. Equo (aka entropy) has binary packages, meaning they are already compiled for you.
Emerge (portage) means you need to compile them yourself. That is how Gentoo works, which is what Sabayon is based off of.
To install filezilla in an easy way:
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# equo install filezilla
Or launch rigo, which is a graphical frontend to entropy and search for filezilla on there.