In Sabayon, if a package is installed with portage, and this package is not in entropy, it will be upgraded only by portage. For upgrade it, simply re-install:
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sudo emerge -av package
If the package is in entropy and in portage... the Portage's installed version will be mantained, until a new version appeared (in entropy or in portage), IN CONDITION THAT the /etc/entropy/client.conf
file was edited, changing the line "ignore pseudo downgrades" was changed from "disable" to "enable"...
this edition of the file is necessary for use portage and entropy in the same installation of Sabayon... If not edited, Entropy packages "upgrading" really "downgrading" the packages!